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Development of a Toxicogenomics Database

As part of its first phase of work (2000-2004) the Committee has recognized the importance of standardized microarray data

formats and public repository databases as the mechanism by which microarray data can be compared and interpreted by the

scientific community at large. In view of this, the Committee partnered with the European Bioinformatics Institute

(http://www.ebi.ac.uk/) to develop a database to house the data generated by the Committee as part of its collaborative

research.  The database is be consistently annotated and integrated with other relevant information (e.g., histopathology,

clinical chemistry, gross observations, etc.), employs standard controlled vocabulary.  The databases houses the majority of the

data generated during the 2000-2004 phase of the HESI genomics research program. 

 

The data are accessible via the ArrayExpress database at:

 

http://www.ebi.ac.uk/aerep/result;jsessionid=ABBE655D8B6504220AD69FF1A44958CC?queryFor=Experiment&eAccession=&eKeyword=ilsi&eSpecies=&eAuthor=&eArrayAccession=&eExperimentType=&eLaboratory=&eArrayDesignName=&eExperimentalFactor=&ePublication=&eArrayProvider=&eDescription=

 

For more information on accessing or querying the database, contact Susanna Sansone sansone@ebi.ac.uk.